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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4202717_4204428_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4202717 - 4204428
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGCTGGA
5'SS Class:
weak_major
3'SS Sequence:
TTCCATTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CTTCCTTCCATT
Flanking Amino Acid:
DNETVPETSAGGELRMAQFF
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.4
55.4
43.9
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
66.5
0.37
1.1
67.8
36.7
Minor 5ss
32.6
-2
3.2
41.6
44.9
Minor BPS
48
-0
2
69.06
42.6

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290