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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4202717_4206533_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4202717 - 4206533
Intron Length:
3817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CTTCCTTCCATT
Flanking Amino Acid:
TQLVVGACWQGGELRMAQFF
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
86.9
30.1
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
66.5
0.37
1.1
67.8
36.7
Minor 5ss
41.8
-0.9
2.9
59.7
44.8
Minor BPS
48
-0
2
69.06
42.6

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031602
4196254 - 4223701
27448