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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4204480_4206533_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4204480 - 4206533
Intron Length:
2054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCTAT
U12 Branch Point Sequence:
CCTTCCCTATTG
Flanking Amino Acid:
TQLVVGACWQEYTENENDNE
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
86.9
30.1
Major BPS
56.2
0.15
1.3
54.7
42.5
Major PPT
85.2
0.79
0.8
79.9
32.3
Minor 5ss
41.8
-0.9
2.9
59.7
44.8
Minor BPS
48.2
-0.2
2
55.43
46.3

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290