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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4206697_4207509_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4206697 - 4207509
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTAAAACT
Flanking Amino Acid:
PAEFHWKLNQVCDKEWHHYV
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.1
0.86
0.8
88
29.4
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
54.4
0.22
1.9
78.49
38

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031602
4196254 - 4223701
27448
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290
ENSAPLT00000034270
4196254 - 4228087
31834