About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4209608_4210764_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4209608 - 4210764
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACGTTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGTTTCTACCT
Flanking Amino Acid:
YSEKSIHRLCGAASGTAELL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
0.9
66.9
38.6
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
48.6
-0
1.9
68.89
42.3

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031602
4196254 - 4223701
27448
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290
ENSAPLT00000034270
4196254 - 4228087
31834