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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4211203_4212151_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4211203 - 4212151
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AAATATTCACTT
Flanking Amino Acid:
PDVPFAIDKDGYIKNTEKLN
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
43.9
-0.3
1.8
57.7
39.1

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000031602
4196254 - 4223701
27448
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290