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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_421224_421730_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
421224 - 421730
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGTATTTACTC
Flanking Amino Acid:
LRSLSSSSNKSIGCVHPRQR
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
31.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.5
0.71
0.7
79.8
25.6
Minor 5ss
30
-2.3
3.2
41.8
44.7
Minor BPS
54.1
0.11
1.8
66.55
39.9

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686