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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4212361_4214791_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4212361 - 4214791
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
PDGANAKKSHKATVHIQVND
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034270
4196254 - 4228087
31834
ENSAPLT00000031602
4196254 - 4223701
27448
ENSAPLT00000029348
4196254 - 4228087
31834
ENSAPLT00000007706
4196254 - 4224543
28290