About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_421847_423553_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
421847 - 423553
Intron Length:
1707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAC
U12 Branch Point Sequence:
CCCTCTCCAACA
Flanking Amino Acid:
SSHLPALIRDSFYSYKSFEN
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
65.9
0.4
1.1
57.5
39.1
Major PPT
70.3
0.46
0.8
65.2
29.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
47
-0.2
1.9
55.53
43.9

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686