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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4223294_4223622_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4223294 - 4223622
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
LAGLFWSGAEFNKHKPWIET
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
78.6
30.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
49.2
-0
2.7
70.8
39.9
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031602
4196254 - 4223701
27448