About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4223294_4224530_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4223294 - 4224530
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCTAGTTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
CTGVFNKHKPWIET
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.08
1.5
58.5
45.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
29.9
-2.3
3.9
43
44
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
CLSTN1
Ensembl Gene ID:
ENSAPLG00000007340
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007706
4196254 - 4224543
28290