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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_423817_424797_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
423817 - 424797
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAATT
Flanking Amino Acid:
AEIEVETREEFTSSLSSLSS
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
66.8
0.61
2
89.07
35.8

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686