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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_425100_427498_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
425100 - 427498
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCG
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACACGTTTACT
Flanking Amino Acid:
ALQAKRSLHQELEFLRVAKK
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.4
39.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78
0.63
0.9
70.2
41.3
Minor 5ss
36.4
-1.5
3.3
47.6
48
Minor BPS
45.3
-0.2
2.4
61.46
47.8

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686