About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_427730_431390_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
427730 - 431390
Intron Length:
3661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATA
Flanking Amino Acid:
GRLRAKYSAQIEDLQVKLQH
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.4
0.68
0.8
73.5
37.1
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
64.7
0.46
1.7
75.34
36.5

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686