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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4295472_4296098_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4295472 - 4296098
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGGTT
5'SS Class:
major
3'SS Sequence:
TCTTGGTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGTTTTCACT
Flanking Amino Acid:
PRQLRTRLAEMDRDLMVGKL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
75.4
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.1
0.57
1
68.6
41.3
Minor 5ss
29.1
-2.4
3.8
45.9
49.3
Minor BPS
56
0.27
1.8
75.92
41.3

Associated Gene:

Gene:
LZIC
Ensembl Gene ID:
ENSAPLG00000009746
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010149
4292604 - 4298531
5928