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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4297409_4298430_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4297409 - 4298430
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGCTCTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGATTTAATA
Flanking Amino Acid:
MQQLQDLEECREELDADEYE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.5
0.51
0.9
69.7
36.7
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
59.7
0.3
1.6
68.68
38.1

Associated Gene:

Gene:
LZIC
Ensembl Gene ID:
ENSAPLG00000009746
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010149
4292604 - 4298531
5928