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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4300161_4302578_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4300161 - 4302578
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCATGCCGA
5'SS Class:
major
3'SS Sequence:
AAGAAGACTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATGGAA
U12 Branch Point Sequence:
AGATCCCGACAA
Flanking Amino Acid:
MKSHTIVLLACGSFN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.3
52.8
44
Major BPS
54.5
0.11
1.4
55.4
42
Major PPT
46.3
-0.2
1.1
35.8
39.3
Minor 5ss
34.7
-1.7
4
46.7
43.2
Minor BPS
41.6
-0.6
2
51.11
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009629
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010026
4300145 - 4303374
3230