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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4304175_4304767_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4304175 - 4304767
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAAGTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTATT
Flanking Amino Acid:
KKKNQSPDIKSTPQIKLLCG
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
61.3
37.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
36.8
-1.5
3.3
49.6
40.8
Minor BPS
60.6
0.42
1.9
81.15
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020926
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029754
4303638 - 4305580
1943