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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4311858_4312119_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4311858 - 4312119
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TCTTCTTCAACA
Flanking Amino Acid:
NKGLDNRKCKSLVTWDNDKL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
80.7
0.69
0.8
77.3
30
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
72.3
0.7
1.5
79.34
37.2

Associated Gene:

Gene:
RBP7
Ensembl Gene ID:
ENSAPLG00000027050
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040530
4309900 - 4312603
2704