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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4317164_4322897_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4317164 - 4322897
Intron Length:
5734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATGTTTGATT
Flanking Amino Acid:
MEELSADEIRRRRLARLA
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
83.2
0.75
0.8
79.8
32.1
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
61.1
0.43
1.8
79.08
37.7

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338