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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4328425_4330026_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4328425 - 4330026
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCCCA
5'SS Class:
major
3'SS Sequence:
CCCTCTAACCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AATAAGTTAACT
Flanking Amino Acid:
RREKRSLTDKEPLSGSEVSE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
63.7
42.4
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
54.5
0.1
1
52.6
34.7
Minor 5ss
34.5
-1.8
2.8
40.8
44.9
Minor BPS
50.6
0.1
2.2
73.86
42.2

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338