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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4338837_4339365_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4338837 - 4339365
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
VGIEERKAPKMCSQPTVSQL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
37.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
49.3
-0
2.5
66.4
45.1
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338