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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4339467_4340258_F

Intron Information:

Intron Rank:
8
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
4339467 - 4340258
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CACATAAATAAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATTTCTTTCACA
Flanking Amino Acid:
LVLQGSLTQPRSLQQQSLLV
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
49.3
-0
1.1
46
38.4
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
71.2
0.66
1.7
81.43
34

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338