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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4343831_4343915_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4343831 - 4343915
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATGTGTTTAATA
Flanking Amino Acid:
FSLSVFAEDDNKVVEKYFSG
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
78.9
0.65
0.8
74.7
34.5
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
61
0.34
1.7
68.96
38.3

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338