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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4344015_4344479_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4344015 - 4344479
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTATTTGAAAT
Flanking Amino Acid:
SLQHYLELARQELFKILHSI
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
76
0.58
1
71.5
42.8
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
59
0.36
1.5
78.6
37.2

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338