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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4345730_4345965_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4345730 - 4345965
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACTGACA
Flanking Amino Acid:
EDVAAWIAELYRDPSPFSEP
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
34.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
32.5
-2
3.3
47.5
42.3
Minor BPS
55.7
0.17
2
72.71
38.9

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338