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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4349423_4350265_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4349423 - 4350265
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCATCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
DVAEFLFFIVQYAPQVLYEP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.2
0.68
0.8
76.8
31.7
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338