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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4351220_4351506_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4351220 - 4351506
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCAATGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TGTGTTTCAATG
Flanking Amino Acid:
AHHGTFMEEFNSGKQFVRYI
Intron Amino Acid Position:
889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
33.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
76.5
0.6
1
72.8
41.9
Minor 5ss
31.3
-2.1
2.7
33.6
35.4
Minor BPS
49.2
-0.2
1.7
55.29
40.9

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338