About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4351652_4352722_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4351652 - 4352722
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAACAGA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACCTTTTTAACC
Flanking Amino Acid:
NKEQWDLLPRDQQQARQSQL
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
58.3
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.8
0.72
0.8
74.3
40.5
Minor 5ss
32.2
-2
2.9
30.9
42.7
Minor BPS
68.2
0.55
1.2
67.42
38.9

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338