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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4352858_4353235_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4352858 - 4353235
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTGGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGTGTTTTACTT
Flanking Amino Acid:
KQVQKPFLRPELGPRLAAML
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
79.3
0.66
0.9
73.9
36.8
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
53.7
0.19
1.7
71.21
40.9

Associated Gene:

Gene:
UBE4B
Ensembl Gene ID:
ENSAPLG00000009105
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009561
4317140 - 4358477
41338