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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4386335_4388602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4386335 - 4388602
Intron Length:
2268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTCCTTACAG
Flanking Amino Acid:
FDYSYWSHTSPEDPCFASQS
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.8
0.6
0.9
69
36.8
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
57.7
0.1
1.8
63.02
44.6

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007024
4369908 - 4453234
83327
ENSAPLT00000025680
4369908 - 4453234
83327