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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4398038_4401615_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4398038 - 4401615
Intron Length:
3578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
GTCTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTCT
U12 Branch Point Sequence:
TCTGCTTTCCCT
Flanking Amino Acid:
RAQGLGDIIDNLKDFQNNKH
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
33.2
-1
4.2
59.6
46.8
Major PPT
82.3
0.73
0.8
80.5
31.6
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
40.8
-0.6
3.6
70.57
47

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007024
4369908 - 4453234
83327