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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4399236_4401693_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4399236 - 4401693
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
AATTTTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAA
U12 Branch Point Sequence:
AATTTTTCCACA
Flanking Amino Acid:
GDEYSGSGGKSSMGSLTASP
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
81.6
31.2
Major BPS
53.5
0.09
1.2
58
38.9
Major PPT
79
0.65
0.8
73.3
36.3
Minor 5ss
44.7
-0.6
2.8
64
40.7
Minor BPS
48.1
-0.1
1.9
62.53
37.8

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025680
4369908 - 4453234
83327