About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4426851_4427576_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4426851 - 4427576
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGT
5'SS Class:
strong_major
3'SS Sequence:
AACTGATATCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTTCCGTTAACT
Flanking Amino Acid:
DRFHWFKLVGSSPIFHGCVN
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.4
39.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
58.4
0.19
1
48.5
43.5
Minor 5ss
33.3
-1.9
3.5
49.7
46.5
Minor BPS
67.3
0.62
2.1
86.57
38.9

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007024
4369908 - 4453234
83327
ENSAPLT00000025680
4369908 - 4453234
83327