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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4437462_4439636_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4437462 - 4439636
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATAAACT
Flanking Amino Acid:
FPPPMPLSKPVPATKLNTMS
Intron Amino Acid Position:
1195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.7
0.71
0.9
86.9
24.4
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
49.7
0.06
2.3
76.66
45.8

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025680
4369908 - 4453234
83327
ENSAPLT00000007024
4369908 - 4453234
83327