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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4439746_4440671_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4439746 - 4440671
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
GTCTCTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGTCTCTCATAC
Flanking Amino Acid:
FEISELEPTGEYIPAIVDHT
Intron Amino Acid Position:
1231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.3
0.57
0.9
69.1
36.2
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
46
-0.3
1.8
58.22
40

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025680
4369908 - 4453234
83327
ENSAPLT00000007024
4369908 - 4453234
83327