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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4449755_4450155_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4449755 - 4450155
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
CTTTTCCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTCTTTGTTT
Flanking Amino Acid:
VDREKELATKCLQLLTHTFN
Intron Amino Acid Position:
1550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
86.4
0.82
0.7
84.7
23
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
49.4
0.03
3.5
86.34
34.1

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007024
4369908 - 4453234
83327
ENSAPLT00000025680
4369908 - 4453234
83327