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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4451873_4452364_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4451873 - 4452364
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
LVPDIEEIRPGSVVSKKGYL
Intron Amino Acid Position:
1664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
KIF1B
Ensembl Gene ID:
ENSAPLG00000006535
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025680
4369908 - 4453234
83327
ENSAPLT00000007024
4369908 - 4453234
83327