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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4459939_4460312_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4459939 - 4460312
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
CGTGTTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTGTTATTAACG
Flanking Amino Acid:
ILNMNDHGFVVCAFNRTVSK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.7
39
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.7
0.58
0.9
66
40.9
Minor 5ss
37.9
-1.4
3
43.9
45.7
Minor BPS
61.4
0.22
1.7
65
42.6

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096