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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4460493_4460624_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4460493 - 4460624
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAATGCTGATTT
Flanking Amino Acid:
SAVDDFINKLVPLLETGDII
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
65.7
35.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.3
0.73
1
80.8
36.6
Minor 5ss
26
-2.8
2.9
27.1
37.5
Minor BPS
47.1
-0.1
2.1
67.03
43.6

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096