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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4460691_4461880_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4460691 - 4461880
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATAAATTAACT
Flanking Amino Acid:
GGNSEYRDTTRRCKELMKKG
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
64
47.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.6
0.85
0.8
80.3
37.3
Minor 5ss
42
-0.9
3.1
57.5
46.6
Minor BPS
56.5
0.28
1.8
75.51
39.9

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096