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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4462000_4463396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4462000 - 4463396
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTCTGCTTACCT
Flanking Amino Acid:
SLMPGGAKEAWPHIKTIFQS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
55.6
0.25
2.1
75.03
47.8

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096