Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4463467_4463838_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4463467 - 4463838

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAATATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCCTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAATG

Flanking Amino Acid:

VGSGEPCCDWVGDEGAGHFV

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

84.2

33.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.61

37.5

Minor 5ss

40.6

-1.1

51.6

45.1

Minor BPS

0.52

1.3

69.97

38.4

Associated Gene:

Gene:

PGD

Ensembl Gene ID:

ENSAPLG00000006367

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006632

4459855 - 4470950

11096