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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4463974_4464642_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4463974 - 4464642
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCTACATATACT
Flanking Amino Acid:
VGMEHDEMSKVFQEWNKTEL
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
34.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
36.5
-1.5
2.9
50.2
46
Minor BPS
46.5
-0.2
2.3
70.1
46.2

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096