About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4467448_4467702_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4467448 - 4467702
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
KKAFLEDIRKALYASKIISY
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096