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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4468271_4469753_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4468271 - 4469753
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
FFKTAVEKCQDSWRRVISTG
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.7
0.67
0.7
76.7
25.3
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
PGD
Ensembl Gene ID:
ENSAPLG00000006367
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006632
4459855 - 4470950
11096