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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4472265_4472565_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4472265 - 4472565
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
TCTGACCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCGGTCTGACCT
Flanking Amino Acid:
GDEQRVLLEQRLRAAVHYTA
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
76.2
0.59
0.9
66
40.6
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
47.5
-0.1
1.8
63.52
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006351
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035939
4472223 - 4475052
2830