Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4473073_4473696_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4473073 - 4473696

Intron Length:

624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TAATTATATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTTTTTTAATT

Flanking Amino Acid:

NFARDLEMFARHAKRSTVTT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

81.8

38.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.52

67.3

42.6

Minor 5ss

36.1

-1.6

3.1

51.1

45.4

Minor BPS

0.99

87.87

31.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035939

4472223 - 4475052

2830

ENSAPLT00000006578

4472112 - 4475052

2941