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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4483940_4484091_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4483940 - 4484091
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
ASCLRELRQKASGVLAIDKA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
DFFA
Ensembl Gene ID:
ENSAPLG00000006310
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006532
4480464 - 4484866
4403