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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_4521367_4544267_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4521367 - 4544267
Intron Length:
22901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AGGTGCTAAACT
Flanking Amino Acid:
ATRRAFLKKKGLTDEEIDLA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
36.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.5
0.55
0.8
65.7
36
Minor 5ss
41
-1
3.1
58.1
46.3
Minor BPS
51.7
0.13
2.1
70.85
45.9

Associated Gene:

Gene:
PEX14
Ensembl Gene ID:
ENSAPLG00000006216
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006446
4491424 - 4558092
66669